Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs2260296 chr13:114174141 A/C 3.99E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2260297 chr13:114174283 A/G 0.000412 177 23.82 29.5 3.7 KM Plot
PCPG rs2260303 chr13:114174575 T/C 0.000389 178 24.1 29.5 3.7 KM Plot
PCPG rs2260304 chr13:114150795 A/G 5.27E-12 176 24.23 29.57 3.32 KM Plot
PCPG rs2260332 chr13:114174753 C/T 3.99E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2260334 chr13:114175004 A/G 0.000387 178 3.7 29.43 24.17 KM Plot
PCPG rs2260335 chr13:114175032 G/A 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2260340 chr13:114175300 C/G 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2260377 chr13:114176028 A/T 0.000389 178 24.1 29.5 3.7 KM Plot
PCPG rs2260381 chr13:114176323 T/G 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2260382 chr13:114176365 C/T 0.000389 178 24.1 29.5 3.7 KM Plot
PCPG rs2260470 chr13:114177725 C/T 4.67E-12 177 24.17 30.33 3.32 KM Plot
PCPG rs2260800 chr13:114138622 A/G 4.2E-12 175 24.23 29.95 3.32 KM Plot
PCPG rs2260814 chr13:114186178 G/A 5.45E-12 176 24.1 30.33 3.32 KM Plot
PCPG rs2260816 chr13:114186112 T/C 6.48E-12 174 24.17 29.95 3.32 KM Plot